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Search for Tandem Repeats in the First Chromosome from the Rice Genome

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dc.contributor.authorKamionskaya, A. M.
dc.contributor.authorKorotkov, E. V.
dc.contributor.authorKorotkova, M. A.
dc.contributor.authorКоротков, Евгений Вадимович
dc.contributor.authorКороткова, Мария Александровна
dc.date.accessioned2024-11-27T07:39:29Z
dc.date.available2024-11-27T07:39:29Z
dc.date.issued2020
dc.description.abstract© 2020, Springer Nature Switzerland AG.Using the RPWM method, we searched for tandem repeats of 2 to 50 nucleotides long in the rice genome. We compared the effectiveness of the RPWM method with Mreps, T-reks, Tandem Repeat Finder and ATR Hunter. About 70% of the tandem repeats found could not be found by other algorithms. The correlation of dispersed repeats and transposons with tandem repeats was studied in this work. We assumed that some of the dispersed repeats and transposons originated from tandem repeats
dc.format.extentС. 291-295
dc.identifier.citationKamionskaya, A. M. Search for Tandem Repeats in the First Chromosome from the Rice Genome / Kamionskaya, A.M., Korotkov, E.V., Korotkova, M.A. // Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). - 2020. - 12304 LNBI. - P. 291-295. - 10.1007/978-3-030-57821-3_26
dc.identifier.doi10.1007/978-3-030-57821-3_26
dc.identifier.urihttps://www.doi.org/10.1007/978-3-030-57821-3_26
dc.identifier.urihttps://www.scopus.com/record/display.uri?eid=2-s2.0-85090096556&origin=resultslist
dc.identifier.urihttps://openrepository.mephi.ru/handle/123456789/22292
dc.relation.ispartofLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
dc.titleSearch for Tandem Repeats in the First Chromosome from the Rice Genome
dc.typeConference Paper
dspace.entity.typePublication
oaire.citation.volume12304 LNBI
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